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Creators/Authors contains: "Oh, Sewoong"

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  1. Tokenization is used almost universally by modern language models, enabling efficient text representation using multi-byte or multi-character tokens. However, prior work has shown that tokenization can introduce distortion into the model's generations, an issue known as the Prompt Boundary Problem (PBP). For example, users are often advised not to end their prompts with a space because it prevents the model from including the space as part of the next token. While this heuristic is effective in English, the underlying PBP continues to affect languages such as Chinese as well as code generation, where tokens often do not line up with word and syntactic boundaries. In this work, we present an inference-time method to convert any autoregressive LM with a BPE tokenizer into a character-level or byte-level LM. Our method efficiently solves the PBP and is also able to unify the vocabularies of language models with different tokenizers, allowing one to ensemble LMs with different tokenizers at inference time or transfer the post-training from one model to another using proxy-tuning. We demonstrate in experiments that the ensemble and proxy-tuned models outperform their constituents on downstream evals. Code is available at this https URL . 
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    Free, publicly-accessible full text available July 11, 2026
  2. Zeroth-order methods are extensively used in machine learning applications where gradients are infeasible or expensive to compute, such as black-box attacks, reinforcement learning, and language model fine-tuning. Existing optimization theory focuses on convergence to an arbitrary stationary point, but less is known about the implicit regularization that provides a fine-grained characterization of which particular solutions are reached. This paper shows that zeroth-order optimization with the standard two-point estimator favors solutions with small trace of Hessian, a measure widely used to distinguish between sharp and flat minima. The authors provide convergence rates of zeroth-order optimization to approximate flat minima for convex and sufficiently smooth functions, defining flat minima as minimizers that achieve the smallest trace of Hessian among all optimal solutions. Experiments on binary classification tasks with convex losses and language model fine-tuning support the theoretical findings. 
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    Free, publicly-accessible full text available June 5, 2026
  3. Mass spectrometry is the dominant technology in the field of proteomics, enabling high-throughput analysis of the protein content of complex biological samples. Due to the complexity of the instrumentation and resulting data, sophisticated computational methods are required for the processing and interpretation of acquired mass spectra. Machine learning has shown great promise to improve the analysis of mass spectrometry data, with numerous purpose-built methods for improving specific steps in the data acquisition and analysis pipeline reaching widespread adoption. Here, we propose unifying various spectrum prediction tasks under a single foundation model for mass spectra. To this end, we pre-train a spectrum encoder using de novo sequencing as a pre-training task. We then show that using these pre-trained spectrum representations improves our performance on the four downstream tasks of spectrum quality prediction, chimericity prediction, phosphorylation prediction, and glycosylation status prediction. Finally, we perform multi-task fine-tuning and find that this approach improves the performance on each task individually. Overall, our work demonstrates that a foundation model for tandem mass spectrometry proteomics trained on de novo sequencing learns generalizable representations of spectra, improves performance on downstream tasks where training data is limited, and can ultimately enhance data acquisition and analysis in proteomics experiments. 
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    Free, publicly-accessible full text available May 19, 2026
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  5. Free, publicly-accessible full text available December 10, 2025
  6. The pretraining data of today's strongest language models is opaque; in particular, little is known about the proportions of various domains or languages represented. In this work, we tackle a task which we call data mixture inference, which aims to uncover the distributional make-up of training data. We introduce a novel attack based on a previously overlooked source of information: byte-pair encoding (BPE) tokenizers, used by the vast majority of modern language models. Our key insight is that the ordered list of merge rules learned by a BPE tokenizer naturally reveals information about the token frequencies in its training data. Given a tokenizer's merge list along with example data for each category of interest, we formulate a linear program that solves for the proportion of each category in the tokenizer's training set. In controlled experiments, we show that our attack recovers mixture ratios with high precision for tokenizers trained on known mixtures of natural languages, programming languages, and data sources. We then apply our approach to off-the-shelf tokenizers released with recent LMs. We confirm much publicly disclosed information about these models, and also make several new inferences: GPT-4o and Mistral NeMo's tokenizers are much more multilingual than their predecessors, training on 39% and 47% non-English language data, respectively; Llama 3 extends GPT-3.5's tokenizer primarily for multilingual (48%) use; GPT-3.5's and Claude's tokenizers are trained on predominantly code (~60%). We hope our work sheds light on current design practices for pretraining data, and inspires continued research into data mixture inference for LMs. 
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    Free, publicly-accessible full text available November 30, 2025
  7. Progress in designing channel codes has been driven by human ingenuity and, fittingly, has been sporadic. Polar codes, developed on the foundation of Arikan's polarization kernel, represent the latest breakthrough in coding theory and have emerged as the state-of-the-art error-correction code for short-to-medium block length regimes. In an effort to automate the invention of good channel codes, especially in this regime, we explore a novel, non-linear generalization of Polar codes, which we call DEEPPOLAR codes. DEEPPOLAR codes extend the conventional Polar coding framework by utilizing a larger kernel size and parameterizing these kernels and matched decoders through neural networks. Our results demonstrate that these data-driven codes effectively leverage the benefits of a larger kernel size, resulting in enhanced reliability when compared to both existing neural codes and conventional Polar codes. 
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  8. We present a sample- and time-efficient differentially private algorithm for ordinary least squares, with error that depends linearly on the dimension and is independent of the condition number of X⊤X, where X is the design matrix. All prior private algorithms for this task require either d3/2 examples, error growing polynomially with the condition number, or exponential time. Our near-optimal accuracy guarantee holds for any dataset with bounded statistical leverage and bounded residuals. Technically, we build on the approach of Brown et al. (2023) for private mean estimation, adding scaled noise to a carefully designed stable nonprivate estimator of the empirical regression vector. 
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